Publikatsioonid

2017

1. Allebrandt KV, Teder-Laving M, Cusumano P, Frishman G, Levandovski R, Ruepp A, Hidalgo MPL, Costa R, Metspalu A, Roenneberg T, De Pittà C. „Identifying pathways modulating sleep duration: from genomics to transcriptomics“. Sci Rep. 2017 Jul 4;7(1):4555. doi: 10.1038/s41598-017-04027-7.

2. Anagnostou P, Dominici V, Battaggia C, Pagani L, Vilar M, Wells RS, Pettener D, Sarno S, Boattini A, Francalacci P, Colonna V, Vona G, Calò C, Destro Bisol G, Tofanelli S. „Overcoming the dichotomy between open and isolated populations using genomic data from a large European dataset“. Sci Rep. 2017 Feb 1;7:41614. doi: 10.1038/srep41614.

3. Behar DM, Saag L, Karmin M, Gover MG, Wexler JD, Sanchez LF, Greenspan E, Kushniarevich A, Davydenko O, Sahakyan H, Yepiskoposyan L, Boattini A, Sarno S, Pagani L, Carmi S, Tzur S, Metspalu E, Bormans C, Skorecki K, Metspalu M, Rootsi S, Villems R. „The genetic variation in the R1a clade among the Ashkenazi Levites' Y chromosome“. Sci Rep. 2017 Nov 2;7(1):14969. doi: 10.1038/s41598-017-14761-7.

4. Bortolini E, Pagani L, Crema ER, Sarno S, Barbieri C, Boattini A, Sazzini M, da Silva SG, Martini G, Metspalu M, Pettener D, Luiselli D, Tehrani JJ. „Inferring patterns of folktale diffusion using genomic data“. Proc Natl Acad Sci U S A. 2017 Aug 22;114(34):9140-9145. doi: 10.1073/pnas.1614395114. Epub 2017 Aug 7.

5. Bortolini E, Pagani L, Crema ER, Sarno S, Barbieri C, Boattini A, Sazzini M, da Silva SG, Martini G, Metspalu M, Pettener D, Luiselli D, Tehrani JJ. „Reply to d'Huy et al.: Navigating biases and charting new ground in the cultural diffusion of folktales“. Proc Natl Acad Sci U S A. 2017 Oct 10;114(41):E8556. doi: 10.1073/pnas.1715139114. Epub 2017 Oct 3.

6. Butcher L, Ahluwalia M, Örd T, Johnston J, Morris RH, Kiss-Toth E, Örd T, Erusalimsky JD. „Evidence for a role of TRIB3 in the regulation of megakaryocytopoiesis“. Sci Rep. 2017 Jul 27;7(1):6684. doi: 10.1038/s41598-017-07096-w.

Varasemad publikatsioonid

1. Allebrandt KV, Teder-Laving M, Cusumano P, Frishman G, Levandovski R, Ruepp A, Hidalgo MPL, Costa R, Metspalu A, Roenneberg T, De Pittà C. „Identifying pathways modulating sleep duration: from genomics to transcriptomics“. Sci Rep. 2017 Jul 4;7(1):4555. doi: 10.1038/s41598-017-04027-7.

2. Anagnostou P, Dominici V, Battaggia C, Pagani L, Vilar M, Wells RS, Pettener D, Sarno S, Boattini A, Francalacci P, Colonna V, Vona G, Calò C, Destro Bisol G, Tofanelli S. „Overcoming the dichotomy between open and isolated populations using genomic data from a large European dataset“. Sci Rep. 2017 Feb 1;7:41614. doi: 10.1038/srep41614.

3. Behar DM, Saag L, Karmin M, Gover MG, Wexler JD, Sanchez LF, Greenspan E, Kushniarevich A, Davydenko O, Sahakyan H, Yepiskoposyan L, Boattini A, Sarno S, Pagani L, Carmi S, Tzur S, Metspalu E, Bormans C, Skorecki K, Metspalu M, Rootsi S, Villems R. „The genetic variation in the R1a clade among the Ashkenazi Levites' Y chromosome“. Sci Rep. 2017 Nov 2;7(1):14969. doi: 10.1038/s41598-017-14761-7.

4. Bortolini E, Pagani L, Crema ER, Sarno S, Barbieri C, Boattini A, Sazzini M, da Silva SG, Martini G, Metspalu M, Pettener D, Luiselli D, Tehrani JJ. „Inferring patterns of folktale diffusion using genomic data“. Proc Natl Acad Sci U S A. 2017 Aug 22;114(34):9140-9145. doi: 10.1073/pnas.1614395114. Epub 2017 Aug 7.

5. Bortolini E, Pagani L, Crema ER, Sarno S, Barbieri C, Boattini A, Sazzini M, da Silva SG, Martini G, Metspalu M, Pettener D, Luiselli D, Tehrani JJ. „Reply to d'Huy et al.: Navigating biases and charting new ground in the cultural diffusion of folktales“. Proc Natl Acad Sci U S A. 2017 Oct 10;114(41):E8556. doi: 10.1073/pnas.1715139114. Epub 2017 Oct 3.

6. Butcher L, Ahluwalia M, Örd T, Johnston J, Morris RH, Kiss-Toth E, Örd T, Erusalimsky JD. „Evidence for a role of TRIB3 in the regulation of megakaryocytopoiesis“. Sci Rep. 2017 Jul 27;7(1):6684. doi: 10.1038/s41598-017-07096-w.

7. Chaubey G, Ayub Q, Rai N, Prakash S, Mushrif-Tripathy V, Mezzavilla M, Pathak AK, Tamang R, Firasat S, Reidla M, Karmin M, Rani DS, Reddy AG, Parik J, Metspalu E, Rootsi S, Dalal K, Khaliq S, Mehdi SQ, Singh L, Metspalu M, Kivisild T, Tyler-Smith C, Villems R, Thangaraj K. „“Like sugar in milk“: reconstructing the genetic history of the Parsi population“. Genome Biol. 2017 Jun 14;18(1):110. doi: 10.1186/s13059-017-1244-9.

8. Chaubey G, Govindraj P, Rai N, van Driem G, Thangaraj K. „The genomewide analysis of Bhils: The second largest tribal population of India“. Man in India. 2017;97:279-290.

9. Chaubey G, Tamang R, Pennarun E, Dubey P, Rai N, Upadhyay RK, Meena RP, Patel JR, van Driem G, Thangaraj K, Metspalu M, Villems R. „Reconstructing the population history of the largest tribe of India: the Dravidian speaking Gond“. Eur J Hum Genet. 2017 Apr;25(4):493-498. doi: 10.1038/ejhg.2016.198. Epub 2017 Feb 1.

10. Eichstaedt CA, Pagani L, Antao T, Inchley CE, Cardona A, Mörseburg A, Clemente FJ, Sluckin TJ, Metspalu E, Mitt M, Mägi R, Hudjashov G, Metspalu M, Mormina M, Jacobs GS, Kivisild T. „Evidence of Early-Stage Selection on EPAS1 and GPR126 Genes in Andean High Altitude Populations“. Sci Rep. 2017 Oct 12;7(1):13042. doi: 10.1038/s41598-017-13382-4.

11. English BC, Van Prooyen N, Örd T, Örd T, Sil A. „The transcription factor CHOP, an effector of the integrated stress response, is required for host sensitivity to the fungal intracellular pathogen Histoplasma capsulatum“. PLoS Pathog. 2017 Sep 27;13(9):e1006589. doi: 10.1371/journal.ppat.1006589. eCollection 2017 Sep.

12. Galaverni M, Caniglia R, Pagani L, Fabbri E, Boattini A, Randi E. „Disentangling Timing of Admixture, Patterns of Introgression, and Phenotypic Indicators in a Hybridizing Wolf Population“. Mol Biol Evol. 2017 Sep 1;34(9):2324-2339. doi: 10.1093/molbev/msx169. 

13. Hudjashov G, Karafet TM, Lawson DJ, Downey S, Savina O, Sudoyo H, Lansing JS, Hammer MF, Cox MP. „Complex Patterns of Admixture across the Indonesian Archipelago“. Mol Biol Evol. 2017 Oct 1;34(10):2439-2452. doi: 10.1093/molbev/msx196.

14. Jagoda E, Lawson DJ, Wall JD, Lambert D, Muller C, Westaway M, Leavesley M, Capellini TD, Mirazón Lahr M, Gerbault P, Thomas MG, Migliano AB, Willerslev E, Metspalu M, Pagani L. „Disentangling Immediate Adaptive Introgression from Selection on Standing Introgressed Variation in Humans“. Mol Biol Evol. 2017 Dec 6. doi: 10.1093/molbev/msx314. [Epub ahead of print]

15. Kivisild T. „The study of human Y chromosome variation through ancient DNA“. Hum Genet. 2017 May;136(5):529-546. doi: 10.1007/s00439-017-1773-z. Epub 2017 Mar 4.

16. Pagani L. „A Cover Story for a Nature cover: genetic signature of human expansions into Eurasia revealed by a panel of worldwide high coverage genomes“. J Anthropol Sci. 2017 Dec 30;95:1-5. doi: 10.4436/JASS.95019. Epub 2017 Aug 7.

17. Posth C, Wißing C, Kitagawa K, Pagani L, van Holstein L, Racimo F, Wehrberger K, Conard NJ, Kind CJ, Bocherens H, Krause J. „Deeply divergent archaic mitochondrial genome provides lower time boundary for African gene flow into Neanderthals“. Nat Commun. 2017 Jul 4;8:16046. doi: 10.1038/ncomms16046.

18. Puustusmaa M, Kirsip H, Gaston K, Abroi A. „The Enigmatic Origin of Papillomavirus Protein Domains“. Viruses. 2017 Aug 23;9(9). pii: E240. doi: 10.3390/v9090240.

19. Saag L, Varul L, Scheib CL, Stenderup J, Allentoft ME, Saag L, Pagani L, Reidla M, Tambets K, Metspalu E, Kriiska A, Willerslev E, Kivisild T, Metspalu M. „Extensive Farming in Estonia Started through a Sex-Biased Migration from the Steppe“. Curr Biol. 2017 Jul 24;27(14):2185-2193.e6. doi: 10.1016/j.cub.2017.06.022. Epub 2017 Jul 14.

20. Sahakyan H, Hooshiar Kashani B, Tamang R, Kushniarevich A, Francis A, Costa MD, Pathak AK, Khachatryan Z, Sharma I, van Oven M, Parik J, Hovhannisyan H, Metspalu E, Pennarun E, Karmin M, Tamm E, Tambets K, Bahmanimehr A, Reisberg T, Reidla M, Achilli A, Olivieri A, Gandini F, Perego UA, Al-Zahery N, Houshmand M, Sanati MH, Soares P,14, Rai E, Šarac J,15, Šarić T, Sharma V, Pereira L, Fernandes V, Černý V, Farjadian S, Singh DP, Azakli H, Üstek D, Ekomasova Trofimova N, Kutuev I, Litvinov S, Bermisheva M, Khusnutdinova EK, Rai N, Singh M, Singh VK, Reddy AG, Tolk HV, Cvjetan S, Lauc LB, Rudan P, Michalodimitrakis EN, Anagnou NP, Pappa KI, Golubenko MV, Orekhov V, Borinskaya SA, Kaldma K, Schauer MA, Simionescu M, Gusar V, Grechanina E, Govindaraj P, Voevoda M, Damba L, Sharma S, Singh L, Semino O, Behar DM, Yepiskoposyan L, Richards MB, Metspalu M, Kivisild T, Thangaraj K, Endicott P, Chaubey G, Torroni A, Villems R. „Origin and spread of human mitochondrial DNA haplogroup U7“. Sci Rep. 2017 Apr 7;7:46044. doi: 10.1038/srep46044.

21. Sankovski E, Abroi A, Ustav M Jr, Ustav M. „Nuclear myosin 1 associates with papillomavirus E2 regulatory protein and influences viral replication“. Virology. 2018 Jan 15;514:142-155. doi: 10.1016/j.virol.2017.11.013. Epub 2018 Jan 4.

22. Sarno S, Boattini A, Pagani L, Sazzini M, De Fanti S, Quagliariello A, Gnecchi Ruscone GA, Guichard E, Ciani G, Bortolini E, Barbieri C, Cilli E, Petrilli R, Mikerezi I, Sineo L, Vilar M, Wells S, Luiselli D, Pettener D. „Ancient and recent admixture layers in Sicily and Southern Italy trace multiple migration routes along the Mediterranean“. Sci Rep. 2017 May 16;7(1):1984. doi: 10.1038/s41598-017-01802-4.

23. Vasar M, Andreson R, Davison J, Jairus T, Moora M, Remm M, Young JPW, Zobel M, Öpik M. „Increased sequencing depth does not increase captured diversity of arbuscular mycorrhizal fungi“. Mycorrhiza. 2017 Nov;27(8):761-773. doi: 10.1007/s00572-017-0791-y. Epub 2017 Jul 20.

24. Ord T, Ord T. „Mammalian Pseudokinase TRIB3 in Normal Physiology and Disease: Charting the Progress in Old and New Avenues“. Curr Protein Pept Sci. 2017;18(8):819-842. doi: 10.2174/1389203718666170406124547.

1. Allebrandt KV, Teder-Laving M, Cusumano P, Frishman G, Levandovski R, Ruepp A, Hidalgo MPL, Costa R, Metspalu A, Roenneberg T, De Pittà C. „Identifying pathways modulating sleep duration: from genomics to transcriptomics“. Sci Rep. 2017 Jul 4;7(1):4555. doi: 10.1038/s41598-017-04027-7.

2. Anagnostou P, Dominici V, Battaggia C, Pagani L, Vilar M, Wells RS, Pettener D, Sarno S, Boattini A, Francalacci P, Colonna V, Vona G, Calò C, Destro Bisol G, Tofanelli S. „Overcoming the dichotomy between open and isolated populations using genomic data from a large European dataset“. Sci Rep. 2017 Feb 1;7:41614. doi: 10.1038/srep41614.

3. Behar DM, Saag L, Karmin M, Gover MG, Wexler JD, Sanchez LF, Greenspan E, Kushniarevich A, Davydenko O, Sahakyan H, Yepiskoposyan L, Boattini A, Sarno S, Pagani L, Carmi S, Tzur S, Metspalu E, Bormans C, Skorecki K, Metspalu M, Rootsi S, Villems R. „The genetic variation in the R1a clade among the Ashkenazi Levites' Y chromosome“. Sci Rep. 2017 Nov 2;7(1):14969. doi: 10.1038/s41598-017-14761-7.

4. Bortolini E, Pagani L, Crema ER, Sarno S, Barbieri C, Boattini A, Sazzini M, da Silva SG, Martini G, Metspalu M, Pettener D, Luiselli D, Tehrani JJ. „Inferring patterns of folktale diffusion using genomic data“. Proc Natl Acad Sci U S A. 2017 Aug 22;114(34):9140-9145. doi: 10.1073/pnas.1614395114. Epub 2017 Aug 7.

5. Bortolini E, Pagani L, Crema ER, Sarno S, Barbieri C, Boattini A, Sazzini M, da Silva SG, Martini G, Metspalu M, Pettener D, Luiselli D, Tehrani JJ. „Reply to d'Huy et al.: Navigating biases and charting new ground in the cultural diffusion of folktales“. Proc Natl Acad Sci U S A. 2017 Oct 10;114(41):E8556. doi: 10.1073/pnas.1715139114. Epub 2017 Oct 3.

6. Butcher L, Ahluwalia M, Örd T, Johnston J, Morris RH, Kiss-Toth E, Örd T, Erusalimsky JD. „Evidence for a role of TRIB3 in the regulation of megakaryocytopoiesis“. Sci Rep. 2017 Jul 27;7(1):6684. doi: 10.1038/s41598-017-07096-w.

7. Chaubey G, Ayub Q, Rai N, Prakash S, Mushrif-Tripathy V, Mezzavilla M, Pathak AK, Tamang R, Firasat S, Reidla M, Karmin M, Rani DS, Reddy AG, Parik J, Metspalu E, Rootsi S, Dalal K, Khaliq S, Mehdi SQ, Singh L, Metspalu M, Kivisild T, Tyler-Smith C, Villems R, Thangaraj K. „“Like sugar in milk“: reconstructing the genetic history of the Parsi population“. Genome Biol. 2017 Jun 14;18(1):110. doi: 10.1186/s13059-017-1244-9.

8. Chaubey G, Govindraj P, Rai N, van Driem G, Thangaraj K. „The genomewide analysis of Bhils: The second largest tribal population of India“. Man in India. 2017;97:279-290.

9. Chaubey G, Tamang R, Pennarun E, Dubey P, Rai N, Upadhyay RK, Meena RP, Patel JR, van Driem G, Thangaraj K, Metspalu M, Villems R. „Reconstructing the population history of the largest tribe of India: the Dravidian speaking Gond“. Eur J Hum Genet. 2017 Apr;25(4):493-498. doi: 10.1038/ejhg.2016.198. Epub 2017 Feb 1.

10. Eichstaedt CA, Pagani L, Antao T, Inchley CE, Cardona A, Mörseburg A, Clemente FJ, Sluckin TJ, Metspalu E, Mitt M, Mägi R, Hudjashov G, Metspalu M, Mormina M, Jacobs GS, Kivisild T. „Evidence of Early-Stage Selection on EPAS1 and GPR126 Genes in Andean High Altitude Populations“. Sci Rep. 2017 Oct 12;7(1):13042. doi: 10.1038/s41598-017-13382-4.

11. English BC, Van Prooyen N, Örd T, Örd T, Sil A. „The transcription factor CHOP, an effector of the integrated stress response, is required for host sensitivity to the fungal intracellular pathogen Histoplasma capsulatum“. PLoS Pathog. 2017 Sep 27;13(9):e1006589. doi: 10.1371/journal.ppat.1006589. eCollection 2017 Sep.

12. Galaverni M, Caniglia R, Pagani L, Fabbri E, Boattini A, Randi E. „Disentangling Timing of Admixture, Patterns of Introgression, and Phenotypic Indicators in a Hybridizing Wolf Population“. Mol Biol Evol. 2017 Sep 1;34(9):2324-2339. doi: 10.1093/molbev/msx169. 

13. Hudjashov G, Karafet TM, Lawson DJ, Downey S, Savina O, Sudoyo H, Lansing JS, Hammer MF, Cox MP. „Complex Patterns of Admixture across the Indonesian Archipelago“. Mol Biol Evol. 2017 Oct 1;34(10):2439-2452. doi: 10.1093/molbev/msx196.

14. Jagoda E, Lawson DJ, Wall JD, Lambert D, Muller C, Westaway M, Leavesley M, Capellini TD, Mirazón Lahr M, Gerbault P, Thomas MG, Migliano AB, Willerslev E, Metspalu M, Pagani L. „Disentangling Immediate Adaptive Introgression from Selection on Standing Introgressed Variation in Humans“. Mol Biol Evol. 2017 Dec 6. doi: 10.1093/molbev/msx314. [Epub ahead of print]

15. Kivisild T. „The study of human Y chromosome variation through ancient DNA“. Hum Genet. 2017 May;136(5):529-546. doi: 10.1007/s00439-017-1773-z. Epub 2017 Mar 4.

16. Pagani L. „A Cover Story for a Nature cover: genetic signature of human expansions into Eurasia revealed by a panel of worldwide high coverage genomes“. J Anthropol Sci. 2017 Dec 30;95:1-5. doi: 10.4436/JASS.95019. Epub 2017 Aug 7.

17. Posth C, Wißing C, Kitagawa K, Pagani L, van Holstein L, Racimo F, Wehrberger K, Conard NJ, Kind CJ, Bocherens H, Krause J. „Deeply divergent archaic mitochondrial genome provides lower time boundary for African gene flow into Neanderthals“. Nat Commun. 2017 Jul 4;8:16046. doi: 10.1038/ncomms16046.

18. Puustusmaa M, Kirsip H, Gaston K, Abroi A. „The Enigmatic Origin of Papillomavirus Protein Domains“. Viruses. 2017 Aug 23;9(9). pii: E240. doi: 10.3390/v9090240.

19. Saag L, Varul L, Scheib CL, Stenderup J, Allentoft ME, Saag L, Pagani L, Reidla M, Tambets K, Metspalu E, Kriiska A, Willerslev E, Kivisild T, Metspalu M. „Extensive Farming in Estonia Started through a Sex-Biased Migration from the Steppe“. Curr Biol. 2017 Jul 24;27(14):2185-2193.e6. doi: 10.1016/j.cub.2017.06.022. Epub 2017 Jul 14.

20. Sahakyan H, Hooshiar Kashani B, Tamang R, Kushniarevich A, Francis A, Costa MD, Pathak AK, Khachatryan Z, Sharma I, van Oven M, Parik J, Hovhannisyan H, Metspalu E, Pennarun E, Karmin M, Tamm E, Tambets K, Bahmanimehr A, Reisberg T, Reidla M, Achilli A, Olivieri A, Gandini F, Perego UA, Al-Zahery N, Houshmand M, Sanati MH, Soares P,14, Rai E, Šarac J,15, Šarić T, Sharma V, Pereira L, Fernandes V, Černý V, Farjadian S, Singh DP, Azakli H, Üstek D, Ekomasova Trofimova N, Kutuev I, Litvinov S, Bermisheva M, Khusnutdinova EK, Rai N, Singh M, Singh VK, Reddy AG, Tolk HV, Cvjetan S, Lauc LB, Rudan P, Michalodimitrakis EN, Anagnou NP, Pappa KI, Golubenko MV, Orekhov V, Borinskaya SA, Kaldma K, Schauer MA, Simionescu M, Gusar V, Grechanina E, Govindaraj P, Voevoda M, Damba L, Sharma S, Singh L, Semino O, Behar DM, Yepiskoposyan L, Richards MB, Metspalu M, Kivisild T, Thangaraj K, Endicott P, Chaubey G, Torroni A, Villems R. „Origin and spread of human mitochondrial DNA haplogroup U7“. Sci Rep. 2017 Apr 7;7:46044. doi: 10.1038/srep46044.

21. Sankovski E, Abroi A, Ustav M Jr, Ustav M. „Nuclear myosin 1 associates with papillomavirus E2 regulatory protein and influences viral replication“. Virology. 2018 Jan 15;514:142-155. doi: 10.1016/j.virol.2017.11.013. Epub 2018 Jan 4.

22. Sarno S, Boattini A, Pagani L, Sazzini M, De Fanti S, Quagliariello A, Gnecchi Ruscone GA, Guichard E, Ciani G, Bortolini E, Barbieri C, Cilli E, Petrilli R, Mikerezi I, Sineo L, Vilar M, Wells S, Luiselli D, Pettener D. „Ancient and recent admixture layers in Sicily and Southern Italy trace multiple migration routes along the Mediterranean“. Sci Rep. 2017 May 16;7(1):1984. doi: 10.1038/s41598-017-01802-4.

23. Vasar M, Andreson R, Davison J, Jairus T, Moora M, Remm M, Young JPW, Zobel M, Öpik M. „Increased sequencing depth does not increase captured diversity of arbuscular mycorrhizal fungi“. Mycorrhiza. 2017 Nov;27(8):761-773. doi: 10.1007/s00572-017-0791-y. Epub 2017 Jul 20.

24. Ord T, Ord T. „Mammalian Pseudokinase TRIB3 in Normal Physiology and Disease: Charting the Progress in Old and New Avenues“. Curr Protein Pept Sci. 2017;18(8):819-842. doi: 10.2174/1389203718666170406124547.

1. Allebrandt KV, Teder-Laving M, Cusumano P, Frishman G, Levandovski R, Ruepp A, Hidalgo MPL, Costa R, Metspalu A, Roenneberg T, De Pittà C. „Identifying pathways modulating sleep duration: from genomics to transcriptomics“. Sci Rep. 2017 Jul 4;7(1):4555. doi: 10.1038/s41598-017-04027-7.

2. Anagnostou P, Dominici V, Battaggia C, Pagani L, Vilar M, Wells RS, Pettener D, Sarno S, Boattini A, Francalacci P, Colonna V, Vona G, Calò C, Destro Bisol G, Tofanelli S. „Overcoming the dichotomy between open and isolated populations using genomic data from a large European dataset“. Sci Rep. 2017 Feb 1;7:41614. doi: 10.1038/srep41614.

3. Behar DM, Saag L, Karmin M, Gover MG, Wexler JD, Sanchez LF, Greenspan E, Kushniarevich A, Davydenko O, Sahakyan H, Yepiskoposyan L, Boattini A, Sarno S, Pagani L, Carmi S, Tzur S, Metspalu E, Bormans C, Skorecki K, Metspalu M, Rootsi S, Villems R. „The genetic variation in the R1a clade among the Ashkenazi Levites' Y chromosome“. Sci Rep. 2017 Nov 2;7(1):14969. doi: 10.1038/s41598-017-14761-7.

4. Bortolini E, Pagani L, Crema ER, Sarno S, Barbieri C, Boattini A, Sazzini M, da Silva SG, Martini G, Metspalu M, Pettener D, Luiselli D, Tehrani JJ. „Inferring patterns of folktale diffusion using genomic data“. Proc Natl Acad Sci U S A. 2017 Aug 22;114(34):9140-9145. doi: 10.1073/pnas.1614395114. Epub 2017 Aug 7.

5. Bortolini E, Pagani L, Crema ER, Sarno S, Barbieri C, Boattini A, Sazzini M, da Silva SG, Martini G, Metspalu M, Pettener D, Luiselli D, Tehrani JJ. „Reply to d'Huy et al.: Navigating biases and charting new ground in the cultural diffusion of folktales“. Proc Natl Acad Sci U S A. 2017 Oct 10;114(41):E8556. doi: 10.1073/pnas.1715139114. Epub 2017 Oct 3.

6. Butcher L, Ahluwalia M, Örd T, Johnston J, Morris RH, Kiss-Toth E, Örd T, Erusalimsky JD. „Evidence for a role of TRIB3 in the regulation of megakaryocytopoiesis“. Sci Rep. 2017 Jul 27;7(1):6684. doi: 10.1038/s41598-017-07096-w.

7. Chaubey G, Ayub Q, Rai N, Prakash S, Mushrif-Tripathy V, Mezzavilla M, Pathak AK, Tamang R, Firasat S, Reidla M, Karmin M, Rani DS, Reddy AG, Parik J, Metspalu E, Rootsi S, Dalal K, Khaliq S, Mehdi SQ, Singh L, Metspalu M, Kivisild T, Tyler-Smith C, Villems R, Thangaraj K. „“Like sugar in milk“: reconstructing the genetic history of the Parsi population“. Genome Biol. 2017 Jun 14;18(1):110. doi: 10.1186/s13059-017-1244-9.

8. Chaubey G, Govindraj P, Rai N, van Driem G, Thangaraj K. „The genomewide analysis of Bhils: The second largest tribal population of India“. Man in India. 2017;97:279-290.

9. Chaubey G, Tamang R, Pennarun E, Dubey P, Rai N, Upadhyay RK, Meena RP, Patel JR, van Driem G, Thangaraj K, Metspalu M, Villems R. „Reconstructing the population history of the largest tribe of India: the Dravidian speaking Gond“. Eur J Hum Genet. 2017 Apr;25(4):493-498. doi: 10.1038/ejhg.2016.198. Epub 2017 Feb 1.

10. Eichstaedt CA, Pagani L, Antao T, Inchley CE, Cardona A, Mörseburg A, Clemente FJ, Sluckin TJ, Metspalu E, Mitt M, Mägi R, Hudjashov G, Metspalu M, Mormina M, Jacobs GS, Kivisild T. „Evidence of Early-Stage Selection on EPAS1 and GPR126 Genes in Andean High Altitude Populations“. Sci Rep. 2017 Oct 12;7(1):13042. doi: 10.1038/s41598-017-13382-4.

11. English BC, Van Prooyen N, Örd T, Örd T, Sil A. „The transcription factor CHOP, an effector of the integrated stress response, is required for host sensitivity to the fungal intracellular pathogen Histoplasma capsulatum“. PLoS Pathog. 2017 Sep 27;13(9):e1006589. doi: 10.1371/journal.ppat.1006589. eCollection 2017 Sep.

12. Galaverni M, Caniglia R, Pagani L, Fabbri E, Boattini A, Randi E. „Disentangling Timing of Admixture, Patterns of Introgression, and Phenotypic Indicators in a Hybridizing Wolf Population“. Mol Biol Evol. 2017 Sep 1;34(9):2324-2339. doi: 10.1093/molbev/msx169. 

13. Hudjashov G, Karafet TM, Lawson DJ, Downey S, Savina O, Sudoyo H, Lansing JS, Hammer MF, Cox MP. „Complex Patterns of Admixture across the Indonesian Archipelago“. Mol Biol Evol. 2017 Oct 1;34(10):2439-2452. doi: 10.1093/molbev/msx196.

14. Jagoda E, Lawson DJ, Wall JD, Lambert D, Muller C, Westaway M, Leavesley M, Capellini TD, Mirazón Lahr M, Gerbault P, Thomas MG, Migliano AB, Willerslev E, Metspalu M, Pagani L. „Disentangling Immediate Adaptive Introgression from Selection on Standing Introgressed Variation in Humans“. Mol Biol Evol. 2017 Dec 6. doi: 10.1093/molbev/msx314. [Epub ahead of print]

15. Kivisild T. „The study of human Y chromosome variation through ancient DNA“. Hum Genet. 2017 May;136(5):529-546. doi: 10.1007/s00439-017-1773-z. Epub 2017 Mar 4.

16. Pagani L. „A Cover Story for a Nature cover: genetic signature of human expansions into Eurasia revealed by a panel of worldwide high coverage genomes“. J Anthropol Sci. 2017 Dec 30;95:1-5. doi: 10.4436/JASS.95019. Epub 2017 Aug 7.

17. Posth C, Wißing C, Kitagawa K, Pagani L, van Holstein L, Racimo F, Wehrberger K, Conard NJ, Kind CJ, Bocherens H, Krause J. „Deeply divergent archaic mitochondrial genome provides lower time boundary for African gene flow into Neanderthals“. Nat Commun. 2017 Jul 4;8:16046. doi: 10.1038/ncomms16046.

18. Puustusmaa M, Kirsip H, Gaston K, Abroi A. „The Enigmatic Origin of Papillomavirus Protein Domains“. Viruses. 2017 Aug 23;9(9). pii: E240. doi: 10.3390/v9090240.

19. Saag L, Varul L, Scheib CL, Stenderup J, Allentoft ME, Saag L, Pagani L, Reidla M, Tambets K, Metspalu E, Kriiska A, Willerslev E, Kivisild T, Metspalu M. „Extensive Farming in Estonia Started through a Sex-Biased Migration from the Steppe“. Curr Biol. 2017 Jul 24;27(14):2185-2193.e6. doi: 10.1016/j.cub.2017.06.022. Epub 2017 Jul 14.

20. Sahakyan H, Hooshiar Kashani B, Tamang R, Kushniarevich A, Francis A, Costa MD, Pathak AK, Khachatryan Z, Sharma I, van Oven M, Parik J, Hovhannisyan H, Metspalu E, Pennarun E, Karmin M, Tamm E, Tambets K, Bahmanimehr A, Reisberg T, Reidla M, Achilli A, Olivieri A, Gandini F, Perego UA, Al-Zahery N, Houshmand M, Sanati MH, Soares P,14, Rai E, Šarac J,15, Šarić T, Sharma V, Pereira L, Fernandes V, Černý V, Farjadian S, Singh DP, Azakli H, Üstek D, Ekomasova Trofimova N, Kutuev I, Litvinov S, Bermisheva M, Khusnutdinova EK, Rai N, Singh M, Singh VK, Reddy AG, Tolk HV, Cvjetan S, Lauc LB, Rudan P, Michalodimitrakis EN, Anagnou NP, Pappa KI, Golubenko MV, Orekhov V, Borinskaya SA, Kaldma K, Schauer MA, Simionescu M, Gusar V, Grechanina E, Govindaraj P, Voevoda M, Damba L, Sharma S, Singh L, Semino O, Behar DM, Yepiskoposyan L, Richards MB, Metspalu M, Kivisild T, Thangaraj K, Endicott P, Chaubey G, Torroni A, Villems R. „Origin and spread of human mitochondrial DNA haplogroup U7“. Sci Rep. 2017 Apr 7;7:46044. doi: 10.1038/srep46044.

21. Sankovski E, Abroi A, Ustav M Jr, Ustav M. „Nuclear myosin 1 associates with papillomavirus E2 regulatory protein and influences viral replication“. Virology. 2018 Jan 15;514:142-155. doi: 10.1016/j.virol.2017.11.013. Epub 2018 Jan 4.

22. Sarno S, Boattini A, Pagani L, Sazzini M, De Fanti S, Quagliariello A, Gnecchi Ruscone GA, Guichard E, Ciani G, Bortolini E, Barbieri C, Cilli E, Petrilli R, Mikerezi I, Sineo L, Vilar M, Wells S, Luiselli D, Pettener D. „Ancient and recent admixture layers in Sicily and Southern Italy trace multiple migration routes along the Mediterranean“. Sci Rep. 2017 May 16;7(1):1984. doi: 10.1038/s41598-017-01802-4.

23. Vasar M, Andreson R, Davison J, Jairus T, Moora M, Remm M, Young JPW, Zobel M, Öpik M. „Increased sequencing depth does not increase captured diversity of arbuscular mycorrhizal fungi“. Mycorrhiza. 2017 Nov;27(8):761-773. doi: 10.1007/s00572-017-0791-y. Epub 2017 Jul 20.

24. Ord T, Ord T. „Mammalian Pseudokinase TRIB3 in Normal Physiology and Disease: Charting the Progress in Old and New Avenues“. Curr Protein Pept Sci. 2017;18(8):819-842. doi: 10.2174/1389203718666170406124547.

1. Allebrandt KV, Teder-Laving M, Cusumano P, Frishman G, Levandovski R, Ruepp A, Hidalgo MPL, Costa R, Metspalu A, Roenneberg T, De Pittà C. „Identifying pathways modulating sleep duration: from genomics to transcriptomics“. Sci Rep. 2017 Jul 4;7(1):4555. doi: 10.1038/s41598-017-04027-7.

2. Anagnostou P, Dominici V, Battaggia C, Pagani L, Vilar M, Wells RS, Pettener D, Sarno S, Boattini A, Francalacci P, Colonna V, Vona G, Calò C, Destro Bisol G, Tofanelli S. „Overcoming the dichotomy between open and isolated populations using genomic data from a large European dataset“. Sci Rep. 2017 Feb 1;7:41614. doi: 10.1038/srep41614.

3. Behar DM, Saag L, Karmin M, Gover MG, Wexler JD, Sanchez LF, Greenspan E, Kushniarevich A, Davydenko O, Sahakyan H, Yepiskoposyan L, Boattini A, Sarno S, Pagani L, Carmi S, Tzur S, Metspalu E, Bormans C, Skorecki K, Metspalu M, Rootsi S, Villems R. „The genetic variation in the R1a clade among the Ashkenazi Levites' Y chromosome“. Sci Rep. 2017 Nov 2;7(1):14969. doi: 10.1038/s41598-017-14761-7.

4. Bortolini E, Pagani L, Crema ER, Sarno S, Barbieri C, Boattini A, Sazzini M, da Silva SG, Martini G, Metspalu M, Pettener D, Luiselli D, Tehrani JJ. „Inferring patterns of folktale diffusion using genomic data“. Proc Natl Acad Sci U S A. 2017 Aug 22;114(34):9140-9145. doi: 10.1073/pnas.1614395114. Epub 2017 Aug 7.

5. Bortolini E, Pagani L, Crema ER, Sarno S, Barbieri C, Boattini A, Sazzini M, da Silva SG, Martini G, Metspalu M, Pettener D, Luiselli D, Tehrani JJ. „Reply to d'Huy et al.: Navigating biases and charting new ground in the cultural diffusion of folktales“. Proc Natl Acad Sci U S A. 2017 Oct 10;114(41):E8556. doi: 10.1073/pnas.1715139114. Epub 2017 Oct 3.

6. Butcher L, Ahluwalia M, Örd T, Johnston J, Morris RH, Kiss-Toth E, Örd T, Erusalimsky JD. „Evidence for a role of TRIB3 in the regulation of megakaryocytopoiesis“. Sci Rep. 2017 Jul 27;7(1):6684. doi: 10.1038/s41598-017-07096-w.

7. Chaubey G, Ayub Q, Rai N, Prakash S, Mushrif-Tripathy V, Mezzavilla M, Pathak AK, Tamang R, Firasat S, Reidla M, Karmin M, Rani DS, Reddy AG, Parik J, Metspalu E, Rootsi S, Dalal K, Khaliq S, Mehdi SQ, Singh L, Metspalu M, Kivisild T, Tyler-Smith C, Villems R, Thangaraj K. „“Like sugar in milk“: reconstructing the genetic history of the Parsi population“. Genome Biol. 2017 Jun 14;18(1):110. doi: 10.1186/s13059-017-1244-9.

8. Chaubey G, Govindraj P, Rai N, van Driem G, Thangaraj K. „The genomewide analysis of Bhils: The second largest tribal population of India“. Man in India. 2017;97:279-290.

9. Chaubey G, Tamang R, Pennarun E, Dubey P, Rai N, Upadhyay RK, Meena RP, Patel JR, van Driem G, Thangaraj K, Metspalu M, Villems R. „Reconstructing the population history of the largest tribe of India: the Dravidian speaking Gond“. Eur J Hum Genet. 2017 Apr;25(4):493-498. doi: 10.1038/ejhg.2016.198. Epub 2017 Feb 1.

10. Eichstaedt CA, Pagani L, Antao T, Inchley CE, Cardona A, Mörseburg A, Clemente FJ, Sluckin TJ, Metspalu E, Mitt M, Mägi R, Hudjashov G, Metspalu M, Mormina M, Jacobs GS, Kivisild T. „Evidence of Early-Stage Selection on EPAS1 and GPR126 Genes in Andean High Altitude Populations“. Sci Rep. 2017 Oct 12;7(1):13042. doi: 10.1038/s41598-017-13382-4.

11. English BC, Van Prooyen N, Örd T, Örd T, Sil A. „The transcription factor CHOP, an effector of the integrated stress response, is required for host sensitivity to the fungal intracellular pathogen Histoplasma capsulatum“. PLoS Pathog. 2017 Sep 27;13(9):e1006589. doi: 10.1371/journal.ppat.1006589. eCollection 2017 Sep.

12. Galaverni M, Caniglia R, Pagani L, Fabbri E, Boattini A, Randi E. „Disentangling Timing of Admixture, Patterns of Introgression, and Phenotypic Indicators in a Hybridizing Wolf Population“. Mol Biol Evol. 2017 Sep 1;34(9):2324-2339. doi: 10.1093/molbev/msx169. 

13. Hudjashov G, Karafet TM, Lawson DJ, Downey S, Savina O, Sudoyo H, Lansing JS, Hammer MF, Cox MP. „Complex Patterns of Admixture across the Indonesian Archipelago“. Mol Biol Evol. 2017 Oct 1;34(10):2439-2452. doi: 10.1093/molbev/msx196.

14. Jagoda E, Lawson DJ, Wall JD, Lambert D, Muller C, Westaway M, Leavesley M, Capellini TD, Mirazón Lahr M, Gerbault P, Thomas MG, Migliano AB, Willerslev E, Metspalu M, Pagani L. „Disentangling Immediate Adaptive Introgression from Selection on Standing Introgressed Variation in Humans“. Mol Biol Evol. 2017 Dec 6. doi: 10.1093/molbev/msx314. [Epub ahead of print]

15. Kivisild T. „The study of human Y chromosome variation through ancient DNA“. Hum Genet. 2017 May;136(5):529-546. doi: 10.1007/s00439-017-1773-z. Epub 2017 Mar 4.

16. Pagani L. „A Cover Story for a Nature cover: genetic signature of human expansions into Eurasia revealed by a panel of worldwide high coverage genomes“. J Anthropol Sci. 2017 Dec 30;95:1-5. doi: 10.4436/JASS.95019. Epub 2017 Aug 7.

17. Posth C, Wißing C, Kitagawa K, Pagani L, van Holstein L, Racimo F, Wehrberger K, Conard NJ, Kind CJ, Bocherens H, Krause J. „Deeply divergent archaic mitochondrial genome provides lower time boundary for African gene flow into Neanderthals“. Nat Commun. 2017 Jul 4;8:16046. doi: 10.1038/ncomms16046.

18. Puustusmaa M, Kirsip H, Gaston K, Abroi A. „The Enigmatic Origin of Papillomavirus Protein Domains“. Viruses. 2017 Aug 23;9(9). pii: E240. doi: 10.3390/v9090240.

19. Saag L, Varul L, Scheib CL, Stenderup J, Allentoft ME, Saag L, Pagani L, Reidla M, Tambets K, Metspalu E, Kriiska A, Willerslev E, Kivisild T, Metspalu M. „Extensive Farming in Estonia Started through a Sex-Biased Migration from the Steppe“. Curr Biol. 2017 Jul 24;27(14):2185-2193.e6. doi: 10.1016/j.cub.2017.06.022. Epub 2017 Jul 14.

20. Sahakyan H, Hooshiar Kashani B, Tamang R, Kushniarevich A, Francis A, Costa MD, Pathak AK, Khachatryan Z, Sharma I, van Oven M, Parik J, Hovhannisyan H, Metspalu E, Pennarun E, Karmin M, Tamm E, Tambets K, Bahmanimehr A, Reisberg T, Reidla M, Achilli A, Olivieri A, Gandini F, Perego UA, Al-Zahery N, Houshmand M, Sanati MH, Soares P,14, Rai E, Šarac J,15, Šarić T, Sharma V, Pereira L, Fernandes V, Černý V, Farjadian S, Singh DP, Azakli H, Üstek D, Ekomasova Trofimova N, Kutuev I, Litvinov S, Bermisheva M, Khusnutdinova EK, Rai N, Singh M, Singh VK, Reddy AG, Tolk HV, Cvjetan S, Lauc LB, Rudan P, Michalodimitrakis EN, Anagnou NP, Pappa KI, Golubenko MV, Orekhov V, Borinskaya SA, Kaldma K, Schauer MA, Simionescu M, Gusar V, Grechanina E, Govindaraj P, Voevoda M, Damba L, Sharma S, Singh L, Semino O, Behar DM, Yepiskoposyan L, Richards MB, Metspalu M, Kivisild T, Thangaraj K, Endicott P, Chaubey G, Torroni A, Villems R. „Origin and spread of human mitochondrial DNA haplogroup U7“. Sci Rep. 2017 Apr 7;7:46044. doi: 10.1038/srep46044.

21. Sankovski E, Abroi A, Ustav M Jr, Ustav M. „Nuclear myosin 1 associates with papillomavirus E2 regulatory protein and influences viral replication“. Virology. 2018 Jan 15;514:142-155. doi: 10.1016/j.virol.2017.11.013. Epub 2018 Jan 4.

22. Sarno S, Boattini A, Pagani L, Sazzini M, De Fanti S, Quagliariello A, Gnecchi Ruscone GA, Guichard E, Ciani G, Bortolini E, Barbieri C, Cilli E, Petrilli R, Mikerezi I, Sineo L, Vilar M, Wells S, Luiselli D, Pettener D. „Ancient and recent admixture layers in Sicily and Southern Italy trace multiple migration routes along the Mediterranean“. Sci Rep. 2017 May 16;7(1):1984. doi: 10.1038/s41598-017-01802-4.

23. Vasar M, Andreson R, Davison J, Jairus T, Moora M, Remm M, Young JPW, Zobel M, Öpik M. „Increased sequencing depth does not increase captured diversity of arbuscular mycorrhizal fungi“. Mycorrhiza. 2017 Nov;27(8):761-773. doi: 10.1007/s00572-017-0791-y. Epub 2017 Jul 20.

24. Ord T, Ord T. „Mammalian Pseudokinase TRIB3 in Normal Physiology and Disease: Charting the Progress in Old and New Avenues“. Curr Protein Pept Sci. 2017;18(8):819-842. doi: 10.2174/1389203718666170406124547.

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31. oktoobril kell 10.00 kaitseb Kristiina Saks meedia ja kommunikatsiooni erialal doktoritööd „Laste elumaailma meediastumine"
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Lili Milani

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